Tại sao change package repository chạy lâu
Source ControlThe Bioconductor project is maintained in a Git source control system. Package maintainers update their packages by pushing changes to their git repositories.
Show The essential steps for transitioning from SVN to git are summarized in
More scenarios for repository creation:
Scenarios for code update:
Github scenarios
See other frequently asked questions. Essential work flowA minimal workflow is to checkout, update, commit, and push changes to your repository. Using
This requires that Bioconductor knows the SSH keys you use to establish your identity. Two useful commands are
If the repository is already cloned, the work flow is to make sure that you are on the ‘master’ branch, pull any changes, then introduce your edits.
Where to Commit ChangesNew features and bug fixes are introduced on the master (‘devel’) branch of the GIT repository.
To make more extensive changes see Fix bugs in devel and release. Bug fixes can be ported to the current release branch. Use
Checks and version bumpsEach commit pushed to the Bioconductor repository should build and check without errors or warnings
Each commit, in either release or devel, should include a bump in the Builds occur once per day, and take approximately 24 hours. See the build report for git commits captured in the most recent build (upper left corner) Annotation packagesTraditional Annotation packages are not stored in GIT due to the size of annotation files. To update an existing Annotation package please send an email to . A member of the Bioconductor team will be in contact to receive the updated package. Newer annotation packages can be stored in GIT as it is a requirement to use the AnnotationHub or similar server hosted data. The larger sized files are not included directly in the package. To contribute a new Annotation package please contact for guidance and read the documentation on How to Create A Hub package. Currently direct updates to annotation packages, even those stored on git, are not supported. If you wish to updated an annotation package, make required changes and push to git.bioconductor.org. Then send an email to or requesting the package be propagated. More helpNeed more help? Ask on the bioc-devel mailing list. Configuring a Local YUM Repository
Querying and Installing Components and Software Packages
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